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Is Chronic Stress Causing Your Fatigue, Hormone Imbalances, and Weight Gain?

Chronic stress isn’t just feeling frazzled or overwhelmed. Over time, it can deeply disrupt hormones, metabolism, mood, fertility—and leave you feeling exhausted, gaining weight, or seeing imbalances you can’t seem to fix. In this post, we’ll explore how chronic stress affects your body (especially hormones), what the science says, and practical solutions—nutrition, supplements, lifestyle, and vagal tone exercises—to help you reclaim balance.

What Happens in Your Body Under Stress

Stress - the cause of multiple health conditions.

To understand why chronic stress can lead to fatigue, hormone imbalances, and weight gain, it's helpful to see what stress does in a biological sense.

Sympathetic vs. Parasympathetic: The Stress Balance

  • Sympathetic Nervous System ("Fight, Flight, Freeze") — activated under stress: increased heart rate, blood pressure, energy mobilization, increased secretion of stress hormones (cortisol, adrenaline).

  • Parasympathetic Nervous System ("Rest, Digest, Heal, Reproduce") — supports recovery, digestion, hormone balance, repair, sleep.

Normally, your body toggles between these. But chronic stress keeps the sympathetic system turned on too much, suppressing parasympathetic activity. This imbalance leads to many downstream effects.


The HPA Axis & Hormone Cascades

The Hypothalamic-Pituitary-Adrenal (HPA) axis is central. Under stress:

  1. Hypothalamus releases CRH (corticotropin-releasing hormone).

  2. Pituitary releases ACTH (adrenocorticotropic hormone).

  3. Adrenals release cortisol and catecholamines (adrenaline, noradrenaline).

When cortisol stays elevated for long periods, it suppresses sex hormones (testosterone, estrogen, progesterone), impairs thyroid function, and alters insulin sensitivity—leading to fat storage and metabolic imbalance.

Effects of Chronic Stress: Fatigue, Hormone Imbalance, and Weight Gain

  • Fatigue & low energy: Initially cortisol is high, but over time regulation becomes dysregulated. You may feel tired, wired, or both.

  • Hormone disruption: Elevated cortisol reduces sex hormone production. Women may notice irregular cycles or fertility struggles; men may see lowered testosterone. Thyroid hormones often drop. (PMC3079864)

  • Weight gain: Cortisol drives belly fat storage, increases appetite, and promotes insulin resistance. (Harvard Health)

  • Inflammation & immune suppression: Chronic stress raises inflammatory cytokines, disrupts gut balance, and weakens immune defenses.

  • Reproductive impacts: Studies link elevated cortisol to lower fertility and ovulatory dysfunction. (Frontiers in Women’s Health)


What the Research Says: Key Studies

  • A 2023 systematic review found higher cortisol levels in some infertile men and women compared with fertile controls. (PubMed)

  • A study of 110 infertile women showed higher morning cortisol and worse IVF outcomes compared to healthy controls. Anxiety levels also correlated with higher cortisol. (Frontiers in Endocrinology)

  • A 2021 trial found that just one session of slow, deep abdominal breathing significantly increased vagal tone and reduced anxiety in both younger and older adults. (Nature)

  • During the COVID pandemic, women under chronic stress experienced greater menstrual cycle variability, linking stress directly to reproductive changes. (Frontiers in Women’s Health)

  • Research by Bruce McEwen and others shows that prolonged cortisol elevation is linked to brain changes, metabolic disease, immune suppression, and bone loss. (PMC2474765)


Signs You Might Be Experiencing Stress-Driven Imbalances

  • Persistent fatigue, especially mornings or afternoons

  • Difficulty sleeping or staying asleep

  • Unexplained weight gain, especially around the midsection

  • Irregular menstrual cycles, PMS, reduced libido, fertility issues

  • Mood swings, anxiety, low motivation

  • Brain fog and poor memory

  • Feeling easily overwhelmed or drained even after rest


Practical Solutions: Restoring Balance

Lifestyle Shifts

  1. Prioritize Sleep: Aim for 7–9 hours, use a consistent schedule, create a calming nighttime routine.

  2. Balanced Nutrition: Whole foods with protein, fiber, and healthy fats to stabilize blood sugar. Avoid processed foods and excess caffeine.

  3. Regular Movement: Moderate exercise (walking, yoga, swimming) plus strength training supports metabolism and hormones.

  4. Manage Stressors: Reduce chronic stress exposure where possible. Mindfulness, journaling, and boundary setting help.

  5. Support Gut & Reduce Inflammation: Eat fermented foods, consider probiotics, and emphasize anti-inflammatory foods like fatty fish, greens, and berries.

Image of prayer and nature healing chronic stress.

Vagal Tone & Parasympathetic Exercises

Simple, quick exercises can shift your nervous system back into balance:

  • Deep belly breathing: Inhale for 4–6 counts, exhale for 6–8 counts. Just 5–10 minutes can increase vagal activity and calm anxiety.

  • Humming, singing, or gargling: Vibrations stimulate the vagus nerve and create relaxation.

  • Cold exposure: Splash cold water on your face, place a cool pack on your neck, or finish showers with 30 seconds of cold.

  • Mindfulness, Meditation & Prayer: Even 5 minutes of stillness focusing on breath can reduce cortisol.

  • Gentle stretching or tai chi: Slow, restorative movements calm the nervous system.


Supplements & Natural Support

Supplements should always be personalized, but here are some with good evidence:

  • Ashwagandha: Multiple trials show it lowers stress, anxiety, and cortisol. Typical doses are 500–600 mg/day of standardized root extract. (NIH ODS)

  • L-Theanine: Found in green tea; helps reduce stress and cortisol while improving focus. (PMC8475422)

  • Magnesium: Supports relaxation, sleep, and healthy cortisol response. Many adults are deficient.

  • Omega-3 fatty acids: EPA and DHA reduce inflammation, support mood, and regulate stress hormones.

Other supportive herbs include rhodiola, holy basil, and licorice root, though evidence is more variable.


Putting It All Together

  1. Get Tested: Labs for cortisol, DHEA, pregnenolone, sex hormones, thyroid and supportive vitamins/minerals (i.e Magnesium) to help pinpoint imbalances.

  2. Build Daily Rhythms: Consistent morning light, hydration, movement, and calming evening routines support the HPA axis.

  3. Use Stress Tools: Incorporate vagal tone exercises daily, especially during stressful transitions.

  4. Target Supplements Wisely: Match support to lab results. For example, use adrenal formulations if DHEA is low, ashwagandha if stress is high, magnesium if sleep is poor.

  5. Reassess & Adjust: Track sleep, mood, energy, and weight. Repeat labs in 8–12 weeks to measure progress.


At Harmony Health Clinic, we provide personalized lab testing, supplement recommendations, and functional medicine support. For example, we often see sub-optimal Prenenolone, DHEA, with elevated Cortisol. This might prompt us to try something like Adrenal Px DHEA by restorative formulations which provides a blend of hormone replacement while offering natural adaptogenic herbs to help regulate cortisol which may be to cause of depleting pregnenolone and DHEA levels. Visit our functional medicine page to learn more, or explore our supplement shop for trusted formulas.


Key Takeaways

  • Chronic stress disrupts your nervous system, keeping cortisol elevated and suppressing hormones.

  • This can cause fatigue, weight gain, fertility issues, and mood imbalance.

  • Science supports the role of vagal tone exercises, adaptogens, and nutrients in restoring balance.

  • Personalized care—labs, nutrition, targeted supplements—is the most effective way forward.


Next Steps:

If you’ve been struggling with unexplained fatigue, weight changes, or hormone imbalances, don’t ignore the role of chronic stress. At Harmony Health Clinic, we specialize in functional medicine approaches that identify root causes and help you heal.

Book your consultation today - We are serving the Naples & SWFL area while also providing telemedicine services to those in Florida.


Disclaimer: This article is for informational purposes only and does not constitute medical advice. Always consult with a licensed healthcare professional before starting any new supplement or treatment plan.

References & Sources

  • Magnon V, Dutheil F, Vallet G. Benefits from one session of deep and slow breathing on vagal tone and anxiety in young and older adults. Scientific Reports, 2021. Nature

  • Karunyam BV, et al. Infertility and cortisol: a systematic review. 2023. PubMed

  • Chai Y, et al. Cortisol dysregulation in anxiety infertile women … Frontiers in Endocrinology, 2023. Frontiers

  • NIH / Office of Dietary Supplements. Ashwagandha Fact Sheet. Office of Dietary Supplements

  • McEwen BS. Central effects of stress hormones in health and disease. PMC

  • Vigil P, et al. Ovulatory dysfunction and chronic stress during the COVID-19 pandemic. Frontiers

  • Health sources: Mayo Clinic (chronic stress effects), Mass General / Cleveland Clinic (vagal tone / hormone imbalance) etc. Cleveland Clinic+3Mayo Clinic+3Cleveland Clinic+3


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